NCBI Accession #
NP_198771.1
NCBI GenBank Nucleotide #
NM_123317.4
NCBI Official Full Name
Zinc finger (C3HC4-type RING finger) family protein
NCBI Official Symbol
VIM3
NCBI Official Synonym Symbols
MIJ24.3; MIJ24_3; ORTH1; ORTHRUS 1; VARIANT IN METHYLATION 3
NCBI Protein Information
Zinc finger (C3HC4-type RING finger) family protein
NCBI Summary
Encodes the VIM3/ORTH1 protein that is similar to VIM1. This protein has an N-terminal PHD domain and two RING domains surrounding an SRA domain. The protein has been shown to bind to methylated cytosines of CG, CNG and CNN motifs via its SRA domain but has a preference for the former. This protein functions as an E3 ubiquitin ligase in vitro with members of the UBC8 family E2s. Either of the two RING domains present in the protein can promote ubiquitylation in vitro, but, not the PHD domain. Over-expression of ORTH1/VIM3 leads to decreased levels of FWA methylation, increased levels of FWA transcripts, and delayed flowering. Cen180 repeats are also hypomethylated in plants overexpressing this protein.
UniProt Synonym Gene Names
VIM3
UniProt Protein Name
E3 ubiquitin-protein ligase ORTHRUS 1
UniProt Synonym Protein Names
Protein VARIANT IN METHYLATION 3; RING-type E3 ubiquitin transferase ORTHRUS 1Curated
UniProt Primary Accession #
Q9FKA7
UniProt Secondary Accession #
Q67XP0
UniProt Related Accession #
Q9FKA7
UniProt Comments
E3 ubiquitin-protein ligase. Participates in CpG methylation-dependent transcriptional regulation and epigenetic transcriptional silencing. Mediates ubiquitination with the E2 ubiquitin-conjugating enzymes UBC11, UBC8 and UBC8 homologs (e.g. UBC10, UBC11, UBC28 and UBC29) but not with UBC27, UBC30, UBC32, UBC34 and UBC36. Promotes methylation-mediated gene silencing leading, for example, to early flowering. Can bind to CpG, CpNpG, and CpNpN DNA motifs, with a strong preference for methylated forms, and with highest affinity for CpG substrate.